Document (#37636)

Author

Almeida Campos, M.L. de
Machado Campos, M.L.
Dávila, A.M.R.
Espanha Gomes, H.
Campos, L.M.
Lira e Oliveira, L. de

Title

Information sciences methodological aspects applied to ontology reuse tools : a study based on genomic annotations in the domain of trypanosomatides

Source

Knowledge organization. 40(2013) no.1, S.50-61

Year

2013

Abstract

Despite the dissemination of modeling languages and tools for representation and construction of ontologies, their underlying methodologies can still be improved. As a consequence, ontology tools can be enhanced accordingly, in order to support users through the ontology construction process. This paper proposes suggestions for ontology tools' improvement based on a case study within the domain of bioinformatics, applying a reuse method ology. Quantitative and qualitative analyses were carried out on a subset of 28 terms of Gene Ontology on a semi-automatic alignment with other biomedical ontologies. As a result, a report is presented containing suggestions for enhancing ontology reuse tools, which is a product derived from difficulties that we had in reusing a set of OBO ontologies. For the reuse process, a set of steps closely related to those of Pinto and Martin's methodology was used. In each step, it was observed that the experiment would have been significantly improved if ontology manipulation tools had provided certain features. Accordingly, problematic aspects in ontology tools are presented and suggestions are made aiming at getting better results in ontology reuse.

Content

Vgl.: http://www.ergon-verlag.de/isko_ko/downloads/ko_40_2013_1_e.pdf.

Theme

Wissensrepräsentation

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4. Noy, N.F.; Musen, M.A.: PROMPT: algorithm and tool for automated ontology merging and alignment 0.23

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5. Sure, Y.; Erdmann, M.; Studer, R.: OntoEdit: collaborative engineering of ontologies (2004) 0.23

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