Document (#32780)

Author

Mahoui, M.
Miled, Z.B.
Godse, A.
Kulkarni, H.
Li, N.

Title

BioFacets : faceted classification for biological information

Source

18th International Conference on Scientific and Statistical Database Management (SSDBM'06)

Year

2006

Pages

S.225-234

Abstract

Biologists are increasingly relying on online biological databases to conduct their research. Despite the availability of hundreds of such databases, only a handful of them are effectively deployed by the community. The main reason for this is the lack of metadata provided by the databases, such as, the types of data stored, its coverage, and its relationship with other databases. Nevertheless, each database has a potential for supporting existing research investigations. The opportunity to leverage the wealth of data available presents several challenges related to data integration and representation. In this paper, we present BioFacets, a new integration system for web based biological databases. The main feature of this system is the proposal of a new faceted classification system that allows for dynamic categorization of biological result sets. Other features of the system include query optimization, cache management and support for a meta-search engine that allows the system to efficiently search across multiple online biological databases.

Footnote

Vgl.: http://doi.ieeecomputersociety.org/10.1109/SSDBM.2006.14.

Field

Biologie

Object

BioFacets

Similar documents (content)

1. Rodríguez, A.; Carazo, J.M.; Trelles-Salazar, O.: Mining association rules from biological databases (2005) 0.21

   0.21075726 = sum of:
     0.21075726 = product of:
       0.6586164 = sum of:
         0.018022222 = weight(abstract_txt:such in 5261) [ClassicSimilarity], result of:
           0.018022222 = score(doc=5261,freq=2.0), product of:
             0.059521984 = queryWeight, product of:
               3.4255946 = idf(docFreq=3909, maxDocs=44218)
               0.017375665 = queryNorm
             0.30278262 = fieldWeight in 5261, product of:
               1.4142135 = tf(freq=2.0), with freq of:
                 2.0 = termFreq=2.0
               3.4255946 = idf(docFreq=3909, maxDocs=44218)
               0.0625 = fieldNorm(doc=5261)
         0.013832379 = weight(abstract_txt:other in 5261) [ClassicSimilarity], result of:
           0.013832379 = score(doc=5261,freq=1.0), product of:
             0.0628656 = queryWeight, product of:
               1.0277035 = boost
               3.5204957 = idf(docFreq=3555, maxDocs=44218)
               0.017375665 = queryNorm
             0.22003098 = fieldWeight in 5261, product of:
               1.0 = tf(freq=1.0), with freq of:
                 1.0 = termFreq=1.0
               3.5204957 = idf(docFreq=3555, maxDocs=44218)
               0.0625 = fieldNorm(doc=5261)
         0.009448724 = weight(abstract_txt:this in 5261) [ClassicSimilarity], result of:
           0.009448724 = score(doc=5261,freq=2.0), product of:
             0.044301424 = queryWeight, product of:
               1.0566126 = boost
               2.4130175 = idf(docFreq=10762, maxDocs=44218)
               0.017375665 = queryNorm
             0.21328263 = fieldWeight in 5261, product of:
               1.4142135 = tf(freq=2.0), with freq of:
                 2.0 = termFreq=2.0
               2.4130175 = idf(docFreq=10762, maxDocs=44218)
               0.0625 = fieldNorm(doc=5261)
         0.015517984 = weight(abstract_txt:search in 5261) [ClassicSimilarity], result of:
           0.015517984 = score(doc=5261,freq=1.0), product of:
             0.0678743 = queryWeight, product of:
               1.0678592 = boost
               3.6580524 = idf(docFreq=3098, maxDocs=44218)
               0.017375665 = queryNorm
             0.22862828 = fieldWeight in 5261, product of:
               1.0 = tf(freq=1.0), with freq of:
                 1.0 = termFreq=1.0
               3.6580524 = idf(docFreq=3098, maxDocs=44218)
               0.0625 = fieldNorm(doc=5261)
         0.017660001 = weight(abstract_txt:data in 5261) [ClassicSimilarity], result of:
           0.017660001 = score(doc=5261,freq=1.0), product of:
             0.08469142 = queryWeight, product of:
               1.4609207 = boost
               3.3363478 = idf(docFreq=4274, maxDocs=44218)
               0.017375665 = queryNorm
             0.20852174 = fieldWeight in 5261, product of:
               1.0 = tf(freq=1.0), with freq of:
                 1.0 = termFreq=1.0
               3.3363478 = idf(docFreq=4274, maxDocs=44218)
               0.0625 = fieldNorm(doc=5261)
         0.05200845 = weight(abstract_txt:allows in 5261) [ClassicSimilarity], result of:
           0.05200845 = score(doc=5261,freq=1.0), product of:
             0.1520073 = queryWeight, product of:
               1.5980616 = boost
               5.474311 = idf(docFreq=503, maxDocs=44218)
               0.017375665 = queryNorm
             0.34214443 = fieldWeight in 5261, product of:
               1.0 = tf(freq=1.0), with freq of:
                 1.0 = termFreq=1.0
               5.474311 = idf(docFreq=503, maxDocs=44218)
               0.0625 = fieldNorm(doc=5261)
         0.08172134 = weight(abstract_txt:databases in 5261) [ClassicSimilarity], result of:
           0.08172134 = score(doc=5261,freq=1.0), product of:
             0.2963097 = queryWeight, product of:
               3.864514 = boost
               4.4127526 = idf(docFreq=1456, maxDocs=44218)
               0.017375665 = queryNorm
             0.27579704 = fieldWeight in 5261, product of:
               1.0 = tf(freq=1.0), with freq of:
                 1.0 = termFreq=1.0
               4.4127526 = idf(docFreq=1456, maxDocs=44218)
               0.0625 = fieldNorm(doc=5261)
         0.45040533 = weight(abstract_txt:biological in 5261) [ClassicSimilarity], result of:
           0.45040533 = score(doc=5261,freq=2.0), product of:
             0.69053787 = queryWeight, product of:
               5.385488 = boost
               7.3793993 = idf(docFreq=74, maxDocs=44218)
               0.017375665 = queryNorm
             0.6522529 = fieldWeight in 5261, product of:
               1.4142135 = tf(freq=2.0), with freq of:
                 2.0 = termFreq=2.0
               7.3793993 = idf(docFreq=74, maxDocs=44218)
               0.0625 = fieldNorm(doc=5261)
       0.32 = coord(8/25)
   

2. Köhler, J.; Philippi, S.; Specht, M.; Rüegg, A.: Ontology based text indexing and querying for the semantic web (2006) 0.21

   0.20801608 = sum of:
     0.20801608 = product of:
       0.57782245 = sum of:
         0.012743637 = weight(abstract_txt:such in 3280) [ClassicSimilarity], result of:
           0.012743637 = score(doc=3280,freq=1.0), product of:
             0.059521984 = queryWeight, product of:
               3.4255946 = idf(docFreq=3909, maxDocs=44218)
               0.017375665 = queryNorm
             0.21409966 = fieldWeight in 3280, product of:
               1.0 = tf(freq=1.0), with freq of:
                 1.0 = termFreq=1.0
               3.4255946 = idf(docFreq=3909, maxDocs=44218)
               0.0625 = fieldNorm(doc=3280)
         0.013832379 = weight(abstract_txt:other in 3280) [ClassicSimilarity], result of:
           0.013832379 = score(doc=3280,freq=1.0), product of:
             0.0628656 = queryWeight, product of:
               1.0277035 = boost
               3.5204957 = idf(docFreq=3555, maxDocs=44218)
               0.017375665 = queryNorm
             0.22003098 = fieldWeight in 3280, product of:
               1.0 = tf(freq=1.0), with freq of:
                 1.0 = termFreq=1.0
               3.5204957 = idf(docFreq=3555, maxDocs=44218)
               0.0625 = fieldNorm(doc=3280)
         0.016365672 = weight(abstract_txt:this in 3280) [ClassicSimilarity], result of:
           0.016365672 = score(doc=3280,freq=6.0), product of:
             0.044301424 = queryWeight, product of:
               1.0566126 = boost
               2.4130175 = idf(docFreq=10762, maxDocs=44218)
               0.017375665 = queryNorm
             0.36941636 = fieldWeight in 3280, product of:
               2.4494898 = tf(freq=6.0), with freq of:
                 6.0 = termFreq=6.0
               2.4130175 = idf(docFreq=10762, maxDocs=44218)
               0.0625 = fieldNorm(doc=3280)
         0.026877936 = weight(abstract_txt:search in 3280) [ClassicSimilarity], result of:
           0.026877936 = score(doc=3280,freq=3.0), product of:
             0.0678743 = queryWeight, product of:
               1.0678592 = boost
               3.6580524 = idf(docFreq=3098, maxDocs=44218)
               0.017375665 = queryNorm
             0.3959958 = fieldWeight in 3280, product of:
               1.7320508 = tf(freq=3.0), with freq of:
                 3.0 = termFreq=3.0
               3.6580524 = idf(docFreq=3098, maxDocs=44218)
               0.0625 = fieldNorm(doc=3280)
         0.017660001 = weight(abstract_txt:data in 3280) [ClassicSimilarity], result of:
           0.017660001 = score(doc=3280,freq=1.0), product of:
             0.08469142 = queryWeight, product of:
               1.4609207 = boost
               3.3363478 = idf(docFreq=4274, maxDocs=44218)
               0.017375665 = queryNorm
             0.20852174 = fieldWeight in 3280, product of:
               1.0 = tf(freq=1.0), with freq of:
                 1.0 = termFreq=1.0
               3.3363478 = idf(docFreq=4274, maxDocs=44218)
               0.0625 = fieldNorm(doc=3280)
         0.047151253 = weight(abstract_txt:integration in 3280) [ClassicSimilarity], result of:
           0.047151253 = score(doc=3280,freq=1.0), product of:
             0.14238928 = queryWeight, product of:
               1.5466781 = boost
               5.298292 = idf(docFreq=600, maxDocs=44218)
               0.017375665 = queryNorm
             0.33114326 = fieldWeight in 3280, product of:
               1.0 = tf(freq=1.0), with freq of:
                 1.0 = termFreq=1.0
               5.298292 = idf(docFreq=600, maxDocs=44218)
               0.0625 = fieldNorm(doc=3280)
         0.04298554 = weight(abstract_txt:system in 3280) [ClassicSimilarity], result of:
           0.04298554 = score(doc=3280,freq=2.0), product of:
             0.14421156 = queryWeight, product of:
               2.4611118 = boost
               3.3723085 = idf(docFreq=4123, maxDocs=44218)
               0.017375665 = queryNorm
             0.2980728 = fieldWeight in 3280, product of:
               1.4142135 = tf(freq=2.0), with freq of:
                 2.0 = termFreq=2.0
               3.3723085 = idf(docFreq=4123, maxDocs=44218)
               0.0625 = fieldNorm(doc=3280)
         0.08172134 = weight(abstract_txt:databases in 3280) [ClassicSimilarity], result of:
           0.08172134 = score(doc=3280,freq=1.0), product of:
             0.2963097 = queryWeight, product of:
               3.864514 = boost
               4.4127526 = idf(docFreq=1456, maxDocs=44218)
               0.017375665 = queryNorm
             0.27579704 = fieldWeight in 3280, product of:
               1.0 = tf(freq=1.0), with freq of:
                 1.0 = termFreq=1.0
               4.4127526 = idf(docFreq=1456, maxDocs=44218)
               0.0625 = fieldNorm(doc=3280)
         0.31848466 = weight(abstract_txt:biological in 3280) [ClassicSimilarity], result of:
           0.31848466 = score(doc=3280,freq=1.0), product of:
             0.69053787 = queryWeight, product of:
               5.385488 = boost
               7.3793993 = idf(docFreq=74, maxDocs=44218)
               0.017375665 = queryNorm
             0.46121246 = fieldWeight in 3280, product of:
               1.0 = tf(freq=1.0), with freq of:
                 1.0 = termFreq=1.0
               7.3793993 = idf(docFreq=74, maxDocs=44218)
               0.0625 = fieldNorm(doc=3280)
       0.36 = coord(9/25)
   

3. Hsu, C.-N.; Chang, C.-H.; Hsieh, C.-H.; Lu, J.-J.; Chang, C.-C.: Reconfigurable Web wrapper agents for biological information integration (2005) 0.18

   0.1768498 = sum of:
     0.1768498 = product of:
       0.884249 = sum of:
         0.006681257 = weight(abstract_txt:this in 5263) [ClassicSimilarity], result of:
           0.006681257 = score(doc=5263,freq=1.0), product of:
             0.044301424 = queryWeight, product of:
               1.0566126 = boost
               2.4130175 = idf(docFreq=10762, maxDocs=44218)
               0.017375665 = queryNorm
             0.1508136 = fieldWeight in 5263, product of:
               1.0 = tf(freq=1.0), with freq of:
                 1.0 = termFreq=1.0
               2.4130175 = idf(docFreq=10762, maxDocs=44218)
               0.0625 = fieldNorm(doc=5263)
         0.046723973 = weight(abstract_txt:data in 5263) [ClassicSimilarity], result of:
           0.046723973 = score(doc=5263,freq=7.0), product of:
             0.08469142 = queryWeight, product of:
               1.4609207 = boost
               3.3363478 = idf(docFreq=4274, maxDocs=44218)
               0.017375665 = queryNorm
             0.55169666 = fieldWeight in 5263, product of:
               2.6457512 = tf(freq=7.0), with freq of:
                 7.0 = termFreq=7.0
               3.3363478 = idf(docFreq=4274, maxDocs=44218)
               0.0625 = fieldNorm(doc=5263)
         0.06668194 = weight(abstract_txt:integration in 5263) [ClassicSimilarity], result of:
           0.06668194 = score(doc=5263,freq=2.0), product of:
             0.14238928 = queryWeight, product of:
               1.5466781 = boost
               5.298292 = idf(docFreq=600, maxDocs=44218)
               0.017375665 = queryNorm
             0.4683073 = fieldWeight in 5263, product of:
               1.4142135 = tf(freq=2.0), with freq of:
                 2.0 = termFreq=2.0
               5.298292 = idf(docFreq=600, maxDocs=44218)
               0.0625 = fieldNorm(doc=5263)
         0.05200845 = weight(abstract_txt:allows in 5263) [ClassicSimilarity], result of:
           0.05200845 = score(doc=5263,freq=1.0), product of:
             0.1520073 = queryWeight, product of:
               1.5980616 = boost
               5.474311 = idf(docFreq=503, maxDocs=44218)
               0.017375665 = queryNorm
             0.34214443 = fieldWeight in 5263, product of:
               1.0 = tf(freq=1.0), with freq of:
                 1.0 = termFreq=1.0
               5.474311 = idf(docFreq=503, maxDocs=44218)
               0.0625 = fieldNorm(doc=5263)
         0.7121534 = weight(abstract_txt:biological in 5263) [ClassicSimilarity], result of:
           0.7121534 = score(doc=5263,freq=5.0), product of:
             0.69053787 = queryWeight, product of:
               5.385488 = boost
               7.3793993 = idf(docFreq=74, maxDocs=44218)
               0.017375665 = queryNorm
             1.0313025 = fieldWeight in 5263, product of:
               2.236068 = tf(freq=5.0), with freq of:
                 5.0 = termFreq=5.0
               7.3793993 = idf(docFreq=74, maxDocs=44218)
               0.0625 = fieldNorm(doc=5263)
       0.2 = coord(5/25)
   

4. Philipkoski, K.: What's in a name? : the future of life (2007) 0.17

   0.17405073 = sum of:
     0.17405073 = product of:
       0.48347425 = sum of:
         0.007964773 = weight(abstract_txt:such in 1214) [ClassicSimilarity], result of:
           0.007964773 = score(doc=1214,freq=1.0), product of:
             0.059521984 = queryWeight, product of:
               3.4255946 = idf(docFreq=3909, maxDocs=44218)
               0.017375665 = queryNorm
             0.1338123 = fieldWeight in 1214, product of:
               1.0 = tf(freq=1.0), with freq of:
                 1.0 = termFreq=1.0
               3.4255946 = idf(docFreq=3909, maxDocs=44218)
               0.0390625 = fieldNorm(doc=1214)
         0.012226212 = weight(abstract_txt:other in 1214) [ClassicSimilarity], result of:
           0.012226212 = score(doc=1214,freq=2.0), product of:
             0.0628656 = queryWeight, product of:
               1.0277035 = boost
               3.5204957 = idf(docFreq=3555, maxDocs=44218)
               0.017375665 = queryNorm
             0.19448175 = fieldWeight in 1214, product of:
               1.4142135 = tf(freq=2.0), with freq of:
                 2.0 = termFreq=2.0
               3.5204957 = idf(docFreq=3555, maxDocs=44218)
               0.0390625 = fieldNorm(doc=1214)
         0.0041757855 = weight(abstract_txt:this in 1214) [ClassicSimilarity], result of:
           0.0041757855 = score(doc=1214,freq=1.0), product of:
             0.044301424 = queryWeight, product of:
               1.0566126 = boost
               2.4130175 = idf(docFreq=10762, maxDocs=44218)
               0.017375665 = queryNorm
             0.094258495 = fieldWeight in 1214, product of:
               1.0 = tf(freq=1.0), with freq of:
                 1.0 = termFreq=1.0
               2.4130175 = idf(docFreq=10762, maxDocs=44218)
               0.0390625 = fieldNorm(doc=1214)
         0.009763308 = weight(abstract_txt:online in 1214) [ClassicSimilarity], result of:
           0.009763308 = score(doc=1214,freq=1.0), product of:
             0.068175204 = queryWeight, product of:
               1.0702236 = boost
               3.6661522 = idf(docFreq=3073, maxDocs=44218)
               0.017375665 = queryNorm
             0.14320907 = fieldWeight in 1214, product of:
               1.0 = tf(freq=1.0), with freq of:
                 1.0 = termFreq=1.0
               3.6661522 = idf(docFreq=3073, maxDocs=44218)
               0.0390625 = fieldNorm(doc=1214)
         0.021833444 = weight(abstract_txt:classification in 1214) [ClassicSimilarity], result of:
           0.021833444 = score(doc=1214,freq=3.0), product of:
             0.08083564 = queryWeight, product of:
               1.1653671 = boost
               3.9920752 = idf(docFreq=2218, maxDocs=44218)
               0.017375665 = queryNorm
             0.27009675 = fieldWeight in 1214, product of:
               1.7320508 = tf(freq=3.0), with freq of:
                 3.0 = termFreq=3.0
               3.9920752 = idf(docFreq=2218, maxDocs=44218)
               0.0390625 = fieldNorm(doc=1214)
         0.087919205 = weight(abstract_txt:biologists in 1214) [ClassicSimilarity], result of:
           0.087919205 = score(doc=1214,freq=2.0), product of:
             0.18589355 = queryWeight, product of:
               1.2496214 = boost
               8.561393 = idf(docFreq=22, maxDocs=44218)
               0.017375665 = queryNorm
             0.47295457 = fieldWeight in 1214, product of:
               1.4142135 = tf(freq=2.0), with freq of:
                 2.0 = termFreq=2.0
               8.561393 = idf(docFreq=22, maxDocs=44218)
               0.0390625 = fieldNorm(doc=1214)
         0.015609384 = weight(abstract_txt:data in 1214) [ClassicSimilarity], result of:
           0.015609384 = score(doc=1214,freq=2.0), product of:
             0.08469142 = queryWeight, product of:
               1.4609207 = boost
               3.3363478 = idf(docFreq=4274, maxDocs=44218)
               0.017375665 = queryNorm
             0.18430892 = fieldWeight in 1214, product of:
               1.4142135 = tf(freq=2.0), with freq of:
                 2.0 = termFreq=2.0
               3.3363478 = idf(docFreq=4274, maxDocs=44218)
               0.0390625 = fieldNorm(doc=1214)
         0.04247882 = weight(abstract_txt:system in 1214) [ClassicSimilarity], result of:
           0.04247882 = score(doc=1214,freq=5.0), product of:
             0.14421156 = queryWeight, product of:
               2.4611118 = boost
               3.3723085 = idf(docFreq=4123, maxDocs=44218)
               0.017375665 = queryNorm
             0.29455903 = fieldWeight in 1214, product of:
               2.236068 = tf(freq=5.0), with freq of:
                 5.0 = termFreq=5.0
               3.3723085 = idf(docFreq=4123, maxDocs=44218)
               0.0390625 = fieldNorm(doc=1214)
         0.28150335 = weight(abstract_txt:biological in 1214) [ClassicSimilarity], result of:
           0.28150335 = score(doc=1214,freq=2.0), product of:
             0.69053787 = queryWeight, product of:
               5.385488 = boost
               7.3793993 = idf(docFreq=74, maxDocs=44218)
               0.017375665 = queryNorm
             0.40765807 = fieldWeight in 1214, product of:
               1.4142135 = tf(freq=2.0), with freq of:
                 2.0 = termFreq=2.0
               7.3793993 = idf(docFreq=74, maxDocs=44218)
               0.0390625 = fieldNorm(doc=1214)
       0.36 = coord(9/25)
   

5. Shachak, A.: Diffusion pattern of the use of genomic databases and analysis of biological sequences from 1970-2003 : bibliographic record analysis of 12 journals (2006) 0.15

   0.14560317 = sum of:
     0.14560317 = product of:
       0.9100198 = sum of:
         0.009448724 = weight(abstract_txt:this in 4906) [ClassicSimilarity], result of:
           0.009448724 = score(doc=4906,freq=2.0), product of:
             0.044301424 = queryWeight, product of:
               1.0566126 = boost
               2.4130175 = idf(docFreq=10762, maxDocs=44218)
               0.017375665 = queryNorm
             0.21328263 = fieldWeight in 4906, product of:
               1.4142135 = tf(freq=2.0), with freq of:
                 2.0 = termFreq=2.0
               2.4130175 = idf(docFreq=10762, maxDocs=44218)
               0.0625 = fieldNorm(doc=4906)
         0.024975015 = weight(abstract_txt:data in 4906) [ClassicSimilarity], result of:
           0.024975015 = score(doc=4906,freq=2.0), product of:
             0.08469142 = queryWeight, product of:
               1.4609207 = boost
               3.3363478 = idf(docFreq=4274, maxDocs=44218)
               0.017375665 = queryNorm
             0.29489428 = fieldWeight in 4906, product of:
               1.4142135 = tf(freq=2.0), with freq of:
                 2.0 = termFreq=2.0
               3.3363478 = idf(docFreq=4274, maxDocs=44218)
               0.0625 = fieldNorm(doc=4906)
         0.16344269 = weight(abstract_txt:databases in 4906) [ClassicSimilarity], result of:
           0.16344269 = score(doc=4906,freq=4.0), product of:
             0.2963097 = queryWeight, product of:
               3.864514 = boost
               4.4127526 = idf(docFreq=1456, maxDocs=44218)
               0.017375665 = queryNorm
             0.5515941 = fieldWeight in 4906, product of:
               2.0 = tf(freq=4.0), with freq of:
                 4.0 = termFreq=4.0
               4.4127526 = idf(docFreq=1456, maxDocs=44218)
               0.0625 = fieldNorm(doc=4906)
         0.7121534 = weight(abstract_txt:biological in 4906) [ClassicSimilarity], result of:
           0.7121534 = score(doc=4906,freq=5.0), product of:
             0.69053787 = queryWeight, product of:
               5.385488 = boost
               7.3793993 = idf(docFreq=74, maxDocs=44218)
               0.017375665 = queryNorm
             1.0313025 = fieldWeight in 4906, product of:
               2.236068 = tf(freq=5.0), with freq of:
                 5.0 = termFreq=5.0
               7.3793993 = idf(docFreq=74, maxDocs=44218)
               0.0625 = fieldNorm(doc=4906)
       0.16 = coord(4/25)